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In nature, waste products from decaying matter, fish waste, and other animal waste are naturally filtered. The harmful ammonia and nitrites are removed by bacteria and plant life. The substrate at the bottom of a body of water will absorb harmful chemicals like a natural filter. The actual size of rivers and lakes will keep water healthy for animals. The larger a body of water, the less lethal any harmful chemicals will be to its inhabitants. In an aquarium, the natural filtration is replaced by equipment which filters the water. The larger the aquarium you own, the easier it is the keep the water healthy. To ensure the ammonia and nitrite levels have not reached harmful levels, be sure to test the water.
To understand how filtration occurs, one needs to understand the cycle. Fish waste and other decomposing material will produce ammonia (NH3). In high quantities, this chemical will kill animals in an aquarium.
There are two types of ammonia, lethal NH3 and non-lethal NH4. When a tank is first started, the NH4 levels will elevate and cloud the tank. NH4 will be produced by the fish’s protective slime-coat. This will only last about 4 to 6 weeks before disappearing. It is natural for a new tank to experience this “Nitrogen Cycle” in the first two months.
The Nitrogen cycle is not to be confused with the production of NH4 from waste material (uneaten food, bits of plants, fish waste, etc.). The ammonia (NH4) will change to nitrite and then nitrate before it leaves the system. Both of these chemicals can be lethal to animals.